Study of Genes Associated With Parkinson Disease Using Feature Selection

Document Type : Original Article

Authors

1 Department of Computer Science, Memorial University of Newfoundland, NF, Canada

2 Department of Computer and Electrical Engineering and Computer Science, Florida Atlantic University, Boca Raton, FL, USA

3 Department of Computer Science, Aarhus University, Aarhus, Denmark

4 Department of Computer and Electrical Engineering and Computer Science, Florida Atlantic University, FL, USA

10.22034/jbr.2020.251812.1035

Abstract

The second most prevalent age-related neurodegenerative disease is Parkinson's (PD) and Genes associated with human diseases like Parkinson are descriptive. Genome-wide association study (GWAS) is used to classify the genes associated with Parkinson’s and other diseases. The information of identified genes empowers scientists to early diagnose, treat, and stop diseases. Due to the complexities of the illness, identifying such genes is a challenging task. In this article, we apply two methods of feature selection to choose a subset of genes that are used to predict PD with high precision in classification. The chromosome corresponding to selected features is analyzed by Perturbation-based Feature Selection (PFS) and Hilbert-Schmidt independence criterion (HSIC)-Lasso. These algorithms are used to identify how chromosomes play an important role with respect to PD. We used a dataset consist of 50 predominantly patients gene expression profiles with early-stage Parkinson's disease (PD) and 55 normal GEO samples. These methods provide a series of features involved in disease-specific processes that are applied to prioritize candidate genes in GWAS loci.

Keywords

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